Characterisation is based on the physical properties of the cells such as size, volume, internal complexity, and granularity, and on individual or a combination of proteins that are specifically localised in distinct sub-populations. These proteins are stained with highly specific fluorescent markers like in fluorescence microscopy.
You can either analyse the composition of mixed cell populations and extract statistical information about each sub-population, or physically collect pure sub-populations of interest in a separate container (tube or multi-well plate) in what is called cell sorting.
In principle, FACS drives individual cells through a laser beam, and the scattered light and the emitted fluorescence is collected and analysed by an array of detectors. Hundreds or thousands of cells per second can be analysed at any single time, making flow cytometry a reliable and fast technique to extract variable information from thousands of cells in a matter of minutes. Applications of flow cytometry include:
- cell sorting
- immunophenotyping
- cell cycle analysis
- apoptosis
- cell proliferation assays
- cell signalling
- intracellular calcium flux